Cheesy Bacon & Egg Bites

Delicious & Easy Bacon Cheese Egg Muffins: Your Ultimate Make-Ahead Breakfast

Wake up to the irresistible aroma of freshly baked bacon cheese egg muffins! These delightful little bites are perfectly soft, wonderfully puffy, extra cheesy, and bursting with savory flavor. Featuring smoky crumbled bacon and rich, melty cheddar, these egg muffins offer a hearty, satisfying, and incredibly easy solution for breakfast or brunch. They are also incredibly convenient to prepare ahead of time, making them your ideal companion for busy mornings or an excellent grab-and-go snack.

Savory egg muffins are a fantastic addition to any breakfast spread, whether you’re hosting a casual brunch with friends or simply looking for a protein-packed start to your day. If you’re on the hunt for more effortless yet delicious recipes, be sure to explore my cheesy sausage breakfast casserole or my indulgent ham and cheese frittata.

Bacon cheese egg muffins stacked on a wooden cutting board.

There’s an undeniable magic when creamy eggs, crispy bacon, and perfectly melted cheese come together. This classic combination is truly unbeatable, forming the foundation of countless beloved breakfast dishes. Just consider my beloved bacon egg and cheese sandwich or these unique bacon cheese hashbrown waffles for proof! On mornings when you’re craving this quintessential breakfast combo but are short on time, these bacon cheese egg muffins are the perfect solution. They are delightfully light and fluffy, much like fancy sous vide egg bites, but with the added convenience of baking up quickly and easily in your oven. Their individual portions make them perfect for meal prepping and ensuring you have a wholesome breakfast ready every day of the week.

Why You’ll Fall in Love with These Bacon and Cheese Egg Muffins

  • Explosion of Flavor: Each bite is a symphony of flavors! These egg muffins are generously loaded with savory, smoky cooked bacon and rich, shredded cheddar cheese. The beauty of this recipe lies in its versatility; you can easily customize it with any other add-ins your heart desires, transforming a simple breakfast into an exciting culinary adventure. It’s an easy breakfast, lunch, or snack that never gets boring.
  • Effortless Make-Ahead Meal: Say goodbye to frantic morning cooking! These delightful eggy puffs of joy are perfectly designed for make-ahead convenience. Prepare a batch on the weekend, and then store them in the fridge for quick breakfasts throughout the week, or freeze them for even longer enjoyment. They’re absolutely perfect for grabbing on the go, ensuring you never skip a meal.
  • Scalable for Any Occasion: Whether you’re feeding a small family or a hungry crowd, this recipe is incredibly easy to double or even triple. Make a large batch on Sunday to enjoy cheesy egg muffins all week long, or prepare enough to impress guests at a festive holiday brunch. Their charming individual portions make serving a breeze, and they always disappear quickly!
  • Customizable to Your Taste: While bacon and cheddar are a classic pairing, these muffins are a blank canvas for your creativity. Experiment with different cheeses, add a variety of vegetables, or spice things up with herbs and chilies. The possibilities are endless, allowing you to tailor each batch to your specific cravings or dietary needs.
Ingredients needed for bacon cheese egg muffins.

Essential Ingredients for Your Egg Muffins

The core of this recipe is simple: eggs! Beyond that, you have the freedom to choose your favorite add-ins to create your perfect savory muffins. Here’s what you’ll typically need for these irresistible bacon cheese egg muffins. For a detailed, printable list of ingredients with exact measurements, please scroll down to the recipe card below.

  • Eggs: You’ll need 5 large, whole eggs. For the fluffiest texture and best flavor, ensure your eggs are fresh. Check out our simple tip below on how to test for egg freshness. Using good quality, fresh eggs truly makes a difference in the final result.
  • Bacon: About 4 strips of cooked and crumbled bacon. Achieving perfectly crispy bacon is key! While I love to make air fryer bacon for its speed and minimal mess, feel free to cook your bacon using your preferred method—whether it’s pan-fried, baked in the oven, or even microwaved until perfectly crisp.
  • Cheese: ¾ cup of shredded cheddar cheese. Cheddar provides a classic, sharp flavor and melts beautifully. However, don’t limit yourself! Any good shreddable, melty cheese will work wonderfully. Excellent alternatives include Monterey Jack for a milder, creamier melt, Swiss for a nutty undertone, Pepper Jack for a hint of spice, Colby for its mildness, or provolone for a slightly tangy profile. Mixing a couple of cheeses can also add depth to the flavor.
  • Salt and Pepper: These foundational seasonings are crucial. Add them to taste, adjusting for the saltiness of your bacon and cheese. Beyond basic salt and pepper, don’t hesitate to get creative with other herbs and spices. A pinch of Italian seasoning can add an herbaceous note, a tiny dash of nutmeg enhances the savoriness of eggs, or a sprinkle of crushed red pepper flakes will give them a subtle kick.

Quick Tip: How to Tell if Your Eggs Are Fresh

An incredibly easy and reliable way to check the freshness of your eggs is by performing the “float test.” Fill a bowl with enough water to fully submerge an egg. Gently place the egg into the water. If the egg sinks to the bottom and lies flat on its side, it is very fresh. If it sinks but stands on its end (pointy side down, blunt side up), it’s still good to eat but getting older. If the egg floats to the surface, it indicates that it’s old and should be discarded, as air has entered through the shell, causing it to float.

Step-by-Step: How to Craft Bacon Cheese Egg Muffins

These bacon and cheese egg muffins are surprisingly straightforward to make, often simpler than preparing a classic omelet, yet the basic assembly process is quite similar. It all comes down to whisking your eggs, incorporating your delicious toppings, and then baking them to golden perfection! Follow the clear steps below for a seamless cooking experience. For fully printable instructions, make sure to refer to the recipe card located at the bottom of this post.

Five eggs cracked into a glass bowl.
Crumbled bacon and cheese added to a bowl of beaten eggs with a whisk.
  • Prepare and Combine the Ingredients: Start by preheating your oven to 400ºF (200ºC) and thoroughly greasing a 6-cup muffin pan. In a large mixing bowl, gently beat your 5 large eggs until the yolks and whites are fully combined and slightly frothy. Next, fold in most of your cooked and crumbled bacon (reserving a small amount for topping) along with approximately ½ cup of your shredded cheese. Season the mixture generously with salt and freshly ground black pepper to taste, ensuring all ingredients are well incorporated.
Muffin pan wells filled with unbaked bacon cheese egg muffin mixture.

Baked bacon cheese egg muffins in a muffin pan.
  • Fill the Muffin Pan: Carefully divide the egg mixture evenly among the six wells of your well-greased muffin pan. Be mindful not to overfill, leaving about ¼ inch from the top, as the egg muffins will puff up during baking. Finish by sprinkling the remaining cheese over the top of each muffin, and then adorn each with any reserved crumbled bacon for an appealing presentation.
  • Bake to Perfection: Place your muffin pan into the preheated oven and bake for 12-15 minutes. The egg muffins are ready when they appear beautifully puffed up, are set in the center, and have a lightly golden color around the edges. A toothpick inserted into the center should come out clean, indicating they are cooked all the way through.
  • Serve and Enjoy: Once baked, remove the muffin pan from the oven. Allow the muffins to cool in the pan for about 2-3 minutes. This crucial cooling time helps them firm up and prevents them from breaking when removed. After cooling slightly, gently pop them out of the pan. Serve them warm immediately for the best experience! See below for delightful serving suggestions.
Bacon cheese egg muffins stacked on a wooden cutting board.

Expert Egg Muffin Recipe Tips for Success

While these cheesy bacon egg muffins are a refreshingly straightforward recipe that doesn’t demand excessive fuss, keeping a few key tips in mind can ensure you achieve perfectly cooked, beautifully shaped, and effortlessly released muffins every single time. Here’s how to get the best results:

  • Generously Grease the Pan: This step is non-negotiable for easy release. Whether you opt for a cooking spray, melted butter, olive oil, or even solid shortening like Crisco, ensure every single well of your muffin pan is thoroughly coated. Egg mixtures are notorious for sticking, and a well-greased pan will prevent your delicious egg muffins from tearing or crumbling when you try to remove them. Don’t just spray; make sure the entire surface is covered.
  • Avoid Overfilling the Wells: Egg muffins, like their cake counterparts, will puff up significantly in the oven as they cook. To prevent any messy overflow and ensure uniform cooking, it’s best to only fill each muffin well about ½ to ¾ of the way full. This allows ample room for them to rise beautifully without spilling over the edges of the pan.
  • Allow for a Brief Cooling Period: Patience is a virtue, especially when it comes to baked goods! After removing your egg muffins from the oven, resist the urge to immediately pop them out of the pan. Let them rest and cool in the baking pan for at least 2-3 minutes. This short cooling period allows the eggs to set further and firm up, making them much less likely to break or fall apart during removal. If you find any stubborn edges, a thin knife or a small offset spatula can gently help loosen them.
  • Evenly Distribute Add-Ins: When adding bacon, cheese, or any other ingredients to your egg mixture, ensure they are distributed as evenly as possible. This prevents all the heavy ingredients from sinking to the bottom of the muffin cups and ensures every bite of every muffin contains a delightful mix of flavors and textures.
  • Don’t Overbake: Overbaking can lead to dry, rubbery egg muffins. Keep a close eye on them during the last few minutes of baking. They are done when they are fully set and spring back slightly when gently touched. The puffed appearance is a good indicator, but a quick visual check for firmness is also helpful.
A bacon cheese egg muffin on a white plate next to a fork.

Get Creative: Exciting Add-In Ideas

Think of this recipe less as a rigid set of rules and more as a versatile method for creating delicious egg muffins tailored precisely to your preferences. I often change up the add-ins depending on what fresh ingredients I have on hand in my fridge or what flavors I’m craving. Here are some fantastic ideas to truly make this recipe your own and keep things exciting:

  • Boost with Veggies: Incorporate finely chopped bell peppers (any color for a vibrant touch!), fresh spinach (wilts beautifully into the eggs), diced onions, savory mushrooms, or tender chopped broccoli florets. For harder vegetables like broccoli or carrots, I highly recommend pre-cooking them slightly (sautéing or blanching) before adding them to the egg mixture. This ensures they are perfectly tender and not undercooked in the final muffin.
  • Experiment with Different Proteins: Beyond bacon, these muffins are excellent with other protein sources. Try adding leftover diced ham for a classic touch, cooked and crumbled breakfast sausage (pork or turkey), or spicy chorizo for a Spanish-inspired kick. Ensure any meat add-ins are fully cooked and crumbled into small pieces before mixing with the eggs.
  • Turn up the Heat: If you love a little spice, there are many ways to kick up the heat. A pinch of cayenne pepper or extra red pepper flakes can provide a subtle warmth. For a bolder flavor, add a squeeze of sriracha directly into the egg mixture or a dash of your favorite hot sauce. Diced jalapeños (fresh or pickled) also work wonders!
  • Tex-Mex Flair: Transform your egg muffins with vibrant Tex-Mex flavors! Borrow the delicious toppings from my breakfast tacos. In addition to bacon and cheese, load up your egg muffins with crispy, finely diced hashbrowns and finely minced fresh jalapeños or green chilies for an authentic taste. A sprinkle of cilantro at the end is also a great touch.
  • Mediterranean Inspired: For a fresh, tangy twist, go Greek! Stir in crumbled feta cheese, chopped Kalamata olives, and sun-dried tomatoes (either oil-packed and drained or rehydrated). A hint of oregano would perfectly complement these flavors.
  • Herb Garden Freshness: Fresh herbs elevate any egg dish. Finely chop chives, parsley, dill, or thyme and mix them into your egg batter for an aromatic boost.

What to Serve With Cheesy Bacon Egg Muffins

A platter of warm, cheesy bacon egg muffins makes for the perfect centerpiece or side dish for any brunch spread. Since this recipe is so easy to double or triple, they are an absolute must-make for special occasions like Mother’s Day brunch, holiday gatherings, or simply a weekend family meal. Consider serving them alongside a variety of sweet and savory accompaniments:

  • Sweet Breakfast Staples: Balance the savory muffins with something sweet. They pair beautifully with light and fluffy air fryer French toast, classic buttermilk pancakes (try my recipe for fluffy buttermilk pancakes), or delicate Nutella crepes. The contrast in flavors and textures creates an unforgettable brunch experience.
  • Hearty Savory Sides: If savory is more your style, these muffins are excellent with other savory dishes. A cheesy crockpot hashbrown casserole is a fantastic, hands-off option. You could also serve them with a fresh fruit salad for a lighter touch, or crispy breakfast potatoes.
  • Beverage Pairings: Don’t forget the drinks! A batch of sparkling raspberry mimosas adds a celebratory touch to any brunch. For a non-alcoholic option, consider fresh orange juice, coffee, or a vibrant smoothie.
A fork stuck into one half of a bacon cheese egg muffin on a white plate.

Storing and Reheating Your Delicious Egg Muffins

The make-ahead friendly nature of these egg muffins is one of their biggest advantages, making them perfect for meal prep. Knowing how to properly store and reheat them ensures you can enjoy them throughout the week with minimal effort.

  • Refrigerate: Once completely cooled to room temperature, store any leftover egg muffins in an airtight container in the fridge. They will maintain their freshness and delicious flavor for up to 3 days. Proper airtight storage prevents them from drying out and absorbing other odors in the refrigerator.
  • Reheat: To warm them up, you have a few convenient options. Gently warm the egg muffins in the microwave for 15-30 seconds per muffin, or until heated through. Alternatively, a toaster oven or conventional oven (at 300°F/150°C for 5-7 minutes) will crisp up the exterior slightly, mimicking a fresh bake. For ultimate convenience, these muffins are also perfectly fine and quite delicious to enjoy at room temperature, making them a superb option for a quick, on-the-go breakfast or snack without any reheating necessary!

Can I Freeze Egg Muffins for Longer Storage?

Absolutely, freezing egg muffins is an excellent way to extend their shelf life and ensure you always have a healthy, homemade breakfast on hand. They freeze beautifully!

Once your baked egg muffins have completely cooled to room temperature, wrap each muffin individually in plastic wrap. This step prevents freezer burn and makes it easy to grab just one or two at a time. After wrapping, place the individually wrapped muffins into a large freezer-safe bag or an airtight container. They can be kept frozen for up to 2 months without any loss of quality. When you’re ready to enjoy, you can reheat the egg muffins straight from frozen in the microwave. Heat them in 15-second increments, checking each time, until they are warmed all the way through and soft in the center. This method is incredibly convenient for those super busy mornings.

More Irresistible Brunch and Breakfast Recipes

If you’ve enjoyed these bacon cheese egg muffins, you’ll love exploring other delightful recipes perfect for breakfast or brunch. Expand your repertoire with these favorites:

  • Fluffy Buttermilk Chocolate Chip Muffins: A sweet treat perfect for any morning.
  • Easy Breakfast Sliders: Great for feeding a crowd with minimal fuss.
  • Bright Blueberry Lemon Muffins: A burst of fruity flavor and sunshine.
  • Hearty Breakfast Quesadilla: A savory, cheesy, and satisfying meal.
  • Quick Air Fryer Eggs: Learn how to cook eggs perfectly in your air fryer.
  • Simple Breakfast Burritos: Another excellent make-ahead option for busy mornings.
Bacon cheese egg muffins stacked on a wooden cutting board.

5 from 1 vote

Bacon Cheese Egg Muffins

By Erin Sellin
These hearty bacon and cheese egg muffins are filled with smoky crumbled bacon and melty cheddar. Enjoy these for brunch, or as an easy on-the-go breakfast!
Prep: 5 minutes
Cook: 15 minutes
Total: 20 minutes
Servings: 6 servings

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Ingredients

  • 5 whole large eggs
  • 4 strips bacon, cooked and crumbled
  • ¾ cup shredded cheddar cheese, divided
  • Salt and pepper to taste

Instructions

  • Preheat oven to 400º F (200°C). Thoroughly grease a 6-cup muffin tin.
  • In a mixing bowl, beat the 5 large eggs until well combined and slightly frothy. Add the crumbled bacon (reserving a few pieces for topping), and ½ cup of the shredded cheese. Mix gently until all ingredients are well incorporated. Season with salt and pepper to taste.
    5 whole large eggs, 4 strips bacon, ¾ cup shredded cheddar cheese, Salt and pepper to taste
  • Divide the egg mixture evenly between the 6 prepared muffin cups, filling each about ½ to ¾ full. Top each muffin with the remaining ¼ cup of cheese and any reserved crumbled bacon pieces.
  • Bake for 12-15 minutes, or until the egg muffins are beautifully puffed up, set in the center, and cooked through.
  • Remove the muffin pan from the oven and let the muffins cool in the pan for 2-3 minutes before carefully removing them to serve.

Nutrition

Serving: 1g | Calories: 153kcal | Carbohydrates: 1g | Protein: 11g | Fat: 11g | Saturated Fat: 5g | Polyunsaturated Fat: 5g | Cholesterol: 177mg | Sodium: 281mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Author: Erin Sellin
Prep Time: 5 minutes
Cook Time: 15 minutes
Total Time: 20 minutes
Course: Breakfast Recipes
Cuisine: American
Servings: 6 servings
Calories: 153
Keyword: bacon cheese egg muffins, egg muffins, egg muffins recipe

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