Gingerbread Cheesecake Swirl Muffins

Irresistible Gingerbread Cheesecake Muffins: Your Ultimate Holiday Baking Guide

Embrace the festive spirit with a delightful treat that perfectly blends warmth and indulgence: Gingerbread Cheesecake Muffins. These aren’t just any muffins; they’re a harmonious marriage of classic, cozy gingerbread spices and a luscious, creamy cheesecake swirl, all baked into a wonderfully moist and tender package. Imagine the aroma filling your kitchen – cinnamon, ginger, and cloves, mingling with the sweet, tangy notes of cream cheese. It’s truly the perfect muffin to brighten any holiday gathering or simply to enjoy with a cup of coffee on a chilly morning.

For those who frequently visit, my passion for muffins is no secret. With an extensive collection of over 50 muffin recipes on the site, there’s undoubtedly a flavor profile to satisfy every craving. But when the holiday season rolls around, my family, like many others, gravitates towards the iconic taste of gingerbread. Whether it’s classic Gingerbread Men Cookies, a stack of fluffy Gingerbread Pancakes, or something new and exciting like these muffins, that distinctive combination of warm spices and rich molasses flavor becomes an absolute must-have.

muffin cut in half showing the cream cheese layer
A beautifully baked gingerbread cheesecake muffin, sliced open to reveal its irresistible creamy center.

The inspiration for these exceptional muffins stems from my existing lineup of cream cheese-filled delights. My popular Pumpkin Cream Cheese Muffins and rich Double Chocolate Cheesecake Muffins laid the groundwork, proving just how much a simple cheesecake layer can elevate a standard muffin. It’s more than just a filling; it’s a creamy, tangy surprise that perfectly complements the robust flavors of the gingerbread.

You start with a truly wonderful gingerbread muffin base – so moist, tender, and fragrant, it could easily stand alone as a fantastic treat. But by incorporating that velvety cheesecake layer, we transform it into something truly extraordinary. This holiday-themed creation offers a delightful textural contrast and an extra burst of flavor that will leave everyone craving more. It’s a culinary journey from a simple holiday favorite to an unforgettable dessert experience.

gingrebread cheesecake muffin ingredients
All the essential ingredients for crafting delicious gingerbread cheesecake muffins.

Essential Ingredients for Gingerbread Cheesecake Muffins

For the complete list with precise measurements, make sure to scroll down to the FULL PRINTABLE recipe card at the bottom of this post.

For the Gingerbread Muffin Batter:

  • All-Purpose Flour: The foundation of our muffin structure. Using all-purpose flour ensures a tender crumb.
  • Baking Soda: Our leavening agent, crucial for achieving that desirable rise and light texture.
  • Salt: A pinch of salt enhances all the other flavors, balancing the sweetness and deepening the spice notes.
  • Ground Cinnamon: A key player in the classic gingerbread spice blend, offering warm, aromatic notes.
  • Ground Ginger: Provides that distinctively zesty and slightly peppery kick that defines gingerbread.
  • Ground Cloves: Adds a rich, pungent depth, rounding out the complex spice profile.
  • Unsalted Butter (Melted): I always opt for unsalted butter in baking to control the overall saltiness of the recipe. Melting it ensures easy incorporation into the wet ingredients.
  • Molasses: The heart of gingerbread flavor. It contributes a deep, caramelized sweetness, moisture, and that characteristic dark hue.
  • Brown Sugar: Adds a moist texture and a hint of caramel flavor, complementing the molasses beautifully.
  • Eggs: Act as a binder, provide structure, and contribute to the richness and moisture of the muffins.
  • Vanilla Extract: A universal flavor enhancer that rounds out the sweetness and spice.
  • Plain Yogurt: A secret weapon for super moist and tender muffins. Its acidity helps tenderize the crumb.
  • Milk: Adds necessary liquid to the batter, ensuring it’s the right consistency.

For the Cream Cheese Filling:

  • Cream Cheese (Softened): The star of our cheesecake swirl! Ensure it’s softened to room temperature for a smooth, lump-free filling. Full-fat cream cheese is recommended for the best flavor and texture.
  • Granulated Sugar: Sweetens the cream cheese, creating a delightful contrast with the gingerbread.
  • Egg: Helps to set the cream cheese filling, giving it a stable yet creamy texture when baked.
  • Vanilla Extract: A touch of vanilla enhances the creamy sweetness of the filling.

Choosing the Right Molasses for Baking

When it comes to molasses, selecting the correct type is paramount for authentic gingerbread flavor. You’ll want to use **dark, unsulphured molasses**. This type offers a robust, complex sweetness without being overly bitter. It’s important to avoid blackstrap molasses, which is significantly darker and has a much more intense, somewhat bitter flavor that can overwhelm the delicate balance of spices in these muffins. For consistent results, Original Grandma’s Molasses is always my go-to choice for baking, delivering that perfect classic gingerbread essence every time.

putting cream cheese layer in gingrebread muffins
Carefully spooning the creamy cheesecake mixture into the gingerbread muffin batter.

How To Bake Gingerbread Cheesecake Muffins: A Step-by-Step Guide

  1. Prepare Your Workspace: Begin by preheating your oven to 350º F (175º C). Line 18 muffin cups with paper liners or spray them thoroughly with non-stick baking spray. Having everything ready before you start mixing is key to a smooth baking process.
  2. Craft the Cheesecake Layer: In a medium bowl, combine the softened cream cheese, granulated sugar, and one large egg. Beat these ingredients together until the mixture is completely smooth and free of any lumps. A hand mixer works wonderfully for this step. Once combined, set this creamy filling aside.
  3. Combine Dry Ingredients: In a separate large bowl, whisk together all of your dry ingredients for the gingerbread muffins: all-purpose flour, baking soda, salt, ground cinnamon, ground ginger, and ground cloves. Ensure they are thoroughly combined to distribute the leavening and spices evenly throughout the batter.
  4. Mix Wet Ingredients: In another bowl, combine the melted butter, rich molasses, light brown sugar, two large eggs, vanilla extract, and milk. Whisk until all these wet ingredients are well blended and smooth.
  5. Bring Batter Together: Gently pour the wet ingredients into the dry ingredients. Mix them together until they are just combined. It’s important not to overmix here; a few small lumps are perfectly fine and actually help keep the muffins tender. Finally, stir in the plain yogurt until it is just incorporated into the batter. The yogurt will make the batter thicken quickly, so proceed to the next step without delay.
  6. Assemble Your Muffins: Spoon approximately 1 to 2 tablespoons of the gingerbread muffin batter into the bottom of each prepared muffin cup. Next, carefully add about 1 tablespoon of the creamy cheesecake mixture on top of the gingerbread batter. Finish by topping the cheesecake layer with an additional 1 to 2 tablespoons of gingerbread muffin batter, fully enclosing the creamy center.
  7. Bake to Perfection: Place your filled muffin tin into the preheated oven and bake for 18 to 20 minutes. The muffins are done when they spring back lightly when touched on top, or when a toothpick inserted into the gingerbread portion (avoiding the cream cheese center) comes out mostly clean, with perhaps a few moist crumbs attached.
  8. Cool and Enjoy: Once baked, remove the muffins from the oven and let them cool in the muffin tin for about 10 minutes. This helps them set. Then, transfer them to a wire rack to cool completely. While they are delicious warm, the flavors meld beautifully once fully cooled.
gingrebread cream cheese muffin on a white plate
A perfectly baked gingerbread cheesecake muffin, ready to be devoured.

Expert Tips for Perfect Gingerbread Cheesecake Muffins

  • Work Efficiently: The muffin batter, especially with the addition of yogurt, tends to thicken quite quickly. To avoid a very stiff batter that’s harder to work with, ensure your oven is preheated, your muffin tin is prepared with liners, and your cheesecake filling is ready to go *before* you mix the wet and dry ingredients together. While a thick batter is fine, working swiftly after combining ensures easier scooping and layering.
  • Always Use Muffin Liners: This recipe involves layering two distinct batters, and it’s quite common for some of the creamy cheesecake filling to inevitably ooze out the sides during baking. This is completely normal and expected! However, if you’ve only greased your muffin cups, these delicious little drips will stick, making it very difficult to remove the muffins cleanly. Using paper liners makes the cleanup and removal process significantly easier, ensuring your beautiful muffins come out intact.
  • Yogurt Flexibility: You can use any type of plain yogurt you prefer – dairy-free, Greek yogurt, or traditional plain yogurt will all work beautifully in this recipe. The primary role of the yogurt is to add a rich moisture and tenderness to the muffins, contributing to a wonderfully soft and desirable texture. Feel free to use what you have on hand or what best suits your dietary needs.
  • Knowing When They’re Done: The best indicator that your muffins are fully baked is to gently press on the top of one. If it springs back immediately, they are done. Alternatively, you can insert a toothpick into the gingerbread portion of a muffin (try to avoid the cream cheese center if possible). If it comes out mostly clean, with only a few moist crumbs attached (no wet batter), then your muffins are ready to be taken out of the oven.
  • Room Temperature Ingredients: For the best results, especially with the cream cheese and eggs, ensure your ingredients are at room temperature. This allows them to combine more smoothly and evenly, leading to a more consistent batter and a better final texture.
  • Do Not Overmix: Overmixing muffin batter develops the gluten in the flour too much, resulting in tough, dry muffins. Mix just until the wet and dry ingredients are *just* combined. A few lumps are acceptable!
  • Cooling is Crucial: While it’s tempting to dive into warm muffins, allowing them to cool for at least 10 minutes in the tin before transferring to a wire rack helps them set properly and prevents them from falling apart. Complete cooling on a wire rack also prevents sogginess on the bottom.
gingerbread cheesecake muffin with the wrapper removed
Enjoying a gingerbread cheesecake muffin, wrapper peeled back to reveal its delicious layers.

Storing Gingerbread Cheesecake Muffins Properly

Due to the delightful cream cheese filling in these muffins, it’s essential to store them correctly to maintain their freshness and safety. Always place them in an airtight container and refrigerate them. They will remain fresh and delicious for about 4-5 days. While they are safe to eat directly from the fridge, their flavors and textures are truly best when served at room temperature. Simply take them out of the refrigerator 20-30 minutes before you plan to enjoy them, allowing them to gently warm up and become wonderfully soft again.

Can You Freeze Gingerbread Cheesecake Muffins?

Absolutely! Muffins are incredibly freezer-friendly, which is why my freezer often has a stash of various batches. These Gingerbread Cheesecake Muffins are no exception and freeze beautifully. To freeze them, ensure they are completely cooled. Then, place them in a single layer in an airtight freezer-safe container or a heavy-duty freezer bag, removing as much air as possible. They will keep well in the freezer for up to 3-4 months. When you’re ready to enjoy them, you have a couple of thawing options: you can let them thaw at room temperature on the counter for a few hours, or for a quicker method, microwave them for approximately 45 seconds per muffin until warmed through and soft.

More Fun Holiday Breakfast & Brunch Recipes

Looking for more festive inspiration for your holiday mornings? Here are some other delectable breakfast and brunch recipes perfect for the season:

  • Eggnog French Toast
  • Classic Cinnamon Rolls
  • Festive Eggnog Muffins
  • Hearty Crockpot Breakfast Casserole
  • Sourdough French Toast
  • Easy Sheet Pan Pancakes
  • Fluffy Cinnamon Scones
  • Sweet Monkey Bread Muffins
close up cut in half muffin

No ratings yet

Gingerbread Cheesecake Muffins

By Erin Sellin
Gingerbread Cheesecake Muffins – the perfect muffin for the holidays! All of those warm and cozy classic gingerbread spices, in a moist and tender muffin with a cream cheese layer in the center.
Prep: 10 minutes
Cook: 20 minutes
Total: 30 minutes
Servings: 18

Pin Recipe
Rate Recipe
Print Recipe

Ingredients 

Gingerbread Muffins

  • 2 1/2 cups all-purpose flour
  • 1 1/2 teaspoons baking soda
  • 1/4 teaspoon salt
  • 1 1/2 teaspoons ground cinnamon
  • 1 1/4 teaspoons ground ginger
  • 1/2 teaspoon ground cloves
  • 1/2 cup unsalted butter, melted
  • 1/2 cup molasses
  • 1/2 cup light brown sugar
  • 2 whole large eggs
  • 1 teaspoon vanilla extract
  • 1/2 cup milk
  • 1/2 cup plain yogurt

Cheesecake Filling

  • 8 ounces cream cheese, softened
  • 1/2 cup granulated sugar
  • 1 whole large egg
  • 1/2 teaspoon vanilla extract

Instructions 

  • Preheat oven to 350º F. Line or spray 18 muffin cups. Set aside. 
  • Start by making the filling. Cream together cream cheese, sugar, egg, and vanilla for cheesecake layer. You want it nice and smooth. Just set aside until you are ready to fill muffin cups.
  • In a bowl combine all dry ingredients (flour, baking soda, salt, and all spices) and whisk until they are well combined.
  • In a separate bowl mix together melted butter, molasses, brown sugar, eggs, vanilla, and milk until well combined and smooth.
  • Mix wet and dry ingredients until they are just combined. Stir in the yogurt until it is incorporated.
  • Fill muffin cups with 1-2 tablespoons of gingerbread muffin batter. Top with 1 tablespoon of cream cheese mixture, and then top with an additional 1-2 tablespoons of muffin batter.
  • Bake for 18-20 minutes until they spring back on top or when a tester comes out mostly clean.
  • Remove and let them cool for about 10 minutes before removing them to a wire rack to cool completely.

Nutrition

Calories: 242kcal | Carbohydrates: 33g | Protein: 4g | Fat: 11g | Saturated Fat: 6g | Polyunsaturated Fat: 4g | Cholesterol: 58mg | Sodium: 199mg | Fiber: 1g | Sugar: 19g

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Author: Erin Sellin
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 30 minutes
Course: Breakfast Recipes
Cuisine: American
Servings: 18
Calories: 242

Like this recipe? Leave a comment below!

I’ve created a vibrant community on Facebook, and I’d be absolutely thrilled for you to join us! It’s a fantastic space where you can share YOUR favorite recipes, ask questions, connect with fellow food lovers, and stay updated on all the new delicious content from Dinners, Dishes, and Desserts – ensuring you never miss a new recipe!

Be sure to follow me on Instagram and tag #dinnersdishes so I can see all the wonderful DINNERS, DISHES, AND DESSERTS recipes YOU create!

Stay connected by following me on my social media channels, so you never miss a delicious post!

Facebook | Twitter | Pinterest | Instagram

.